apply.formula.HLM: Apply Hierarchical Linear Model with specific formula

In Jerby-Lab/opipes: What the Package Does (One Line, Title Case)

Apply Hierarchical Linear Model with specific formula

Description

Wrapper to compute differentially expressed genes with a hierarchical linear model

Usage

apply.formula.HLM(
  r,
  X,
  Y,
  MARGIN = 1,
  formula = "y ~ (1 | samples) + x",
  ttest.flag = F
)

Arguments

r	list object of sequencing data
X	fixed effects
Y	outcome
formula	formula for the hierarchical model
ttest.flag	(default = F) is flag for computing ttest?

Value

pvalues of hlm

Jerby-Lab/opipes documentation built on Oct. 7, 2022, 12:28 p.m.