run_pca: Wrapper around PCA

In Jerby-Lab/opipes: What the Package Does (One Line, Title Case)

Wrapper around PCA

Description

functionality for returning PCA results in Seurat Object

functionality for returning PCA results in Seurat Object

Usage

run_pca(so, approx_pca.flag = F, pca.assay = "RNA", n_pcs = 30, verbose = F)

run_pca(so, approx_pca.flag = F, pca.assay = "RNA", n_pcs = 30, verbose = F)

Arguments

so	a SeuratObject of your data
approx_pca.flag	approximate PCA calculation?
pca.assay	which assay to use, SCT or RNA
verbose	whether to be verbose with output

Jerby-Lab/opipes documentation built on Oct. 7, 2022, 12:28 p.m.