scRNA_cluster.annotation.HG: Hypergeometric Test

In Jerby-Lab/opipes: What the Package Does (One Line, Title Case)

Hypergeometric Test

Description

function for computing hypergeometric test on single cell clustered data

function for computing hypergeometric test on single cell clustered data

Usage

scRNA_cluster.annotation.HG(r, cell.clusters, EM.flag)

scRNA_cluster.annotation.HG(r, cell.clusters, EM.flag)

Arguments

r	data list including the gene expression data
cell.clusters	a n-length list of cluster assignments, where n = number of cells
EM.flag	whether to compute EM

Value

data list, but now including a cell.types slot

data list, but now including a cell.types slot

Jerby-Lab/opipes documentation built on Oct. 7, 2022, 12:28 p.m.