umap_tsne: Wrapper around UMAP and/or TSNE

In Jerby-Lab/opipes: What the Package Does (One Line, Title Case)

Wrapper around UMAP and/or TSNE

Description

functionality for returning UMAP an TSNE results

Usage

umap_tsne(
  so,
  tsne.flag = F,
  umap.flag = F,
  n_dims = 30,
  reduction = "pca",
  verbose = F
)

Arguments

so	a SeuratObject of your data
tsne.flag	boolean, run tSNE?
umap.flag	boolean, run umap?
n_dims	number of dimensions you want to use from your embedding space
reduction	string that matches to the right reduction slot
verbose	whether to be verbose in the calculation

Value

SeuratObject with computed visualizations

Jerby-Lab/opipes documentation built on Oct. 7, 2022, 12:28 p.m.