JinmiaoChenLab/cytofkit2: cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression. Cytofkit2 integrates state-of-the-art bioinformatics methods and in-house novel algorithms for data pre-processing, data visualization through linear or non-linear dimensionality reduction (UMAP/tSNE), cell clustering, automatic identification of cell subsets and inference of the relatedness between cell subsets.

install.packages("remotes")
remotes::install_github("JinmiaoChenLab/cytofkit2")