Man pages for Jmendo12/evemodel
Expression Variance Evolution Model
| betaSharedTest | Beta shared test |
| covarianceOU | Covariance from phylogeny under the OU model |
| dmvnorm_nocheck | Faster multivariate normal density calculation |
| EVEmodel | Generate multivariate normal distribution parameters for an... |
| evolVarOU | Calculate evolutionary variance from phylogeny under the OU... |
| expectedMeanOU | Calculate expected species mean from phylogeny under the OU... |
| fitOneTheta | Fit the maximum likelihood estimate of the parameters for a... |
| getEdgesFromMRCA | Get the edges for a clade in a phylogeny given the tips |
| initParamsOneTheta | Estimate initial parameter values for the one-theta model |
| initParamsTwoTheta | Estimate initial parameter values for two-theta model without... |
| prepEVEmodel | Generate a EVEmodel function with pre-computed data for... |
| simOneTheta | Simulate expression data for the one-theta EVE model, i.e.... |
| simTwoTheta | Simulate expression data for the two-theta EVE model, i.e.... |
| twoThetaTest | Test for shift in theta at branch |
