betaSharedTest: Beta shared test

In Jmendo12/evemodel: Expression Variance Evolution Model

Description

Beta shared test

Usage

betaSharedTest(tree, gene.data, colSpecies = colnames(gene.data), ...)

Arguments

tree	Species phylogeny (phylo object)
gene.data	A matrix of expression values with samples in columns and genes in rows
colSpecies	A character vector with same length as columns in gene.data, specifying the species for the corresponding column.
...	Parameters passed to fitOneTheta and fitSharedBeta

Value

List with:

• indivBetaRes: results from fitOneTheta

• sharedBetaRes: results from fitSharedBeta

• sharedBeta: the estimated shared beta parameter

• LRT: log likelihood ratio test statistic between the individual and shared beta model

Jmendo12/evemodel documentation built on June 17, 2020, 8:56 p.m.