EVEmodel: Generate multivariate normal distribution parameters for an...

In Jmendo12/evemodel: Expression Variance Evolution Model

Description

Generate multivariate normal distribution parameters for an EVE model

Usage

EVEmodel(tree, thetas, alphas, sigma2s, beta, rootVar, rootE, index.expand)

Arguments

tree	Species phylogeny (phylo object)
thetas	Vector of theta parameters for each edge in the tree
alphas	Vector of alpha parameters for each edge in the tree
sigma2s	Vector of sigma2 parameters for each edge in the tree
beta	The beta parameter
rootVar	The evolutionary variance at the root node
rootE	The expected species mean at the root node
index.expand	A vector mapping individual samples, i.e. columns in the gene expression matrix, to the species in the phylogeny

Value

List with covariance matrix (sigma) and expected species means (mean)

Jmendo12/evemodel documentation built on June 17, 2020, 8:56 p.m.