Description Usage Arguments Value
Generate multivariate normal distribution parameters for an EVE model
1 |
tree |
Species phylogeny (phylo object) |
thetas |
Vector of theta parameters for each edge in the tree |
alphas |
Vector of alpha parameters for each edge in the tree |
sigma2s |
Vector of sigma2 parameters for each edge in the tree |
beta |
The beta parameter |
rootVar |
The evolutionary variance at the root node |
rootE |
The expected species mean at the root node |
index.expand |
A vector mapping individual samples, i.e. columns in the gene expression matrix, to the species in the phylogeny |
List with covariance matrix (sigma) and expected species means (mean)
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