prepEVEmodel: Generate a EVEmodel function with pre-computed data for...

In Jmendo12/evemodel: Expression Variance Evolution Model

Description

Generate a EVEmodel function with pre-computed data for faster execution

Usage

prepEVEmodel(tree, index.expand, thetaIdx, alphaIdx, sigma2Idx, betaIdx)

Arguments

tree	Species phylogeny (phylo object)
index.expand	A vector mapping individual samples, i.e. columns in the gene expression matrix, to the species in the phylogeny
thetaIdx	Vector of integers holding the index of the theta parameter for each edge
alphaIdx	Vector of integers holding the index of the alpha parameter for each edge
sigma2Idx	Vector of integers holding the index of the sigma2 parameter for each edge
betaIdx	Vector of integers holding the index of the beta parameter

Value

a function with a single parameter holding a vector of parameters

Jmendo12/evemodel documentation built on June 17, 2020, 8:56 p.m.