Man pages for Jmendo12/evemodel
Expression Variance Evolution Model

betaSharedTestBeta shared test
covarianceOUCovariance from phylogeny under the OU model
dmvnorm_nocheckFaster multivariate normal density calculation
EVEmodelGenerate multivariate normal distribution parameters for an...
evolVarOUCalculate evolutionary variance from phylogeny under the OU...
expectedMeanOUCalculate expected species mean from phylogeny under the OU...
fitOneThetaFit the maximum likelihood estimate of the parameters for a...
getEdgesFromMRCAGet the edges for a clade in a phylogeny given the tips
initParamsOneThetaEstimate initial parameter values for the one-theta model
initParamsTwoThetaEstimate initial parameter values for two-theta model without...
prepEVEmodelGenerate a EVEmodel function with pre-computed data for...
simOneThetaSimulate expression data for the one-theta EVE model, i.e....
simTwoThetaSimulate expression data for the two-theta EVE model, i.e....
twoThetaTestTest for shift in theta at branch
Jmendo12/evemodel documentation built on Aug. 29, 2019, 7:25 p.m.