In JohnReid/DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Cell sizes

The distribution of cell sizes by capture time.

ggplot(samples.l$S %>% left_join(cell.map), aes(x=S, color=capture, fill=capture)) +
    geom_histogram(position='dodge') +
    geom_rug()

The posterior mean and standard deviation of the cell sizes coloured by capture group.

S.l <- samples.l$S %>% group_by(c) %>% summarise(S.mean=mean(S), S.sd=sd(S))
ggplot(S.l %>% left_join(cell.map), aes(x=S.mean, y=S.sd, color=capture)) + geom_point()

JohnReid/DeLorean documentation built on Sept. 27, 2021, 5:45 a.m.