In JohnReid/DeLorean: Estimates Pseudotimes for Single Cell Expression Data

Convergence

We plot the $\hat{R}$ statistics calculated by Stan.

plot(dl, type="Rhat")

Pseudotime convergence

How many of the pseudotime $\hat{R}$ were below a particular level?

ggplot(dl$rhat.df %>% filter(parameter == "tau"), aes(rhat)) + stat_ecdf()

JohnReid/DeLorean documentation built on Sept. 27, 2021, 5:45 a.m.