docs/test.md

In Jorisvansteenbrugge/TcT: Trait-based Comparative Transcriptomics

Custom Traits

PHA:

• K01895
• K00925
• K00625
• K00626
• K00023
• K03821

traits <- list("PhosphatePhoU" = c(RNAseq.data$features$annotation.db$module.dict$`Phosphate transporter`, "K02039"))


custom_trait_attributes <- Add_Custom_Trait(RNAseq.data, traits, pairwise.distances, distance.metrics, bkgd.traits)

#Incorporate the custom traits into the existing library

trait.attributes.pruned <- c(trait.attributes.pruned, custom_trait_attributes)


#Incorporate the custom trait definition into the annotation.db
RNAseq.data$features$annotation.db$module.dict <- c(RNAseq.data$features$annotation.db$module.dict, traits)

Plot_Trait_Attribute_Expression("PhosphatePhoU", trait.attributes.pruned, RNAseq.data)

Jorisvansteenbrugge/TcT documentation built on Sept. 26, 2022, 6:50 a.m.