DNBplot: DNBplot

In Kaiyu-W/DNBr: Compute the Dynamic Network Biomarkers (DNB) model

DNBplot

Description

Visualize the DNB score information

Usage

DNBplot(
  object,
  ranking = NULL,
  group = NULL,
  resource = NULL,
  show = TRUE,
  save_pdf = FALSE,
  file_prefix = NULL,
  meta_levels = NULL,
  ...
)

Arguments

object	S3:DNB_output or df_score (output of ScoreExtract)
ranking	for DNB_output, default 1 if NULL
group	for DNB_output, default random selected if NULL
resource	the actual module name, ranking & group will be ignored if use
show	whether to show, default TRUE
save_pdf	whether to save pdf file, default FALSE
file_prefix	the file prefix if save_pdf, default NULL
meta_levels	the order of meta-group in the plots, default levels(df_score$Names) if NULL
...	for future use

Value

plot or pdf

Author(s)

Kaiyu Wang, in ChenLab of CAS, Shanghai, China

Examples

data(data.example)
data(meta.example)
a <- DNBcompute(data.example, meta.example)
b <- DNBfilter(a, ntop = 5)
DNBplot(b, show = TRUE, save_pdf = FALSE)

Kaiyu-W/DNBr documentation built on April 27, 2024, 10:09 a.m.