refNetworkCreate: refNetworkCreate
In Kaiyu-W/DNBr: Compute the Dynamic Network Biomarkers (DNB) model
refNetworkCreate R Documentation
refNetworkCreate
Description
Compute genes network from reference samples
Usage
refNetworkCreate(
ref_gex,
method = "pearson",
p_thre = 0.001,
prior_network = NULL
)
Arguments
ref_gex
gene expression matrix of reference
method
correlation method, pearson (PCC, default) or spearman
p_thre
p_value threshold for correlation
prior_network
the prior network, such as experimental protein-protein interaction (PPI network)
NULL (default) or a data.frame that has 2 columns of node couples
Value
a list including matrix r, P and r_sig
Kaiyu-W/DNBr documentation built on April 27, 2024, 10:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| refNetworkCreate | R Documentation |
refNetworkCreate
Description
Compute genes network from reference samples
Usage
refNetworkCreate(
ref_gex,
method = "pearson",
p_thre = 0.001,
prior_network = NULL
)
Arguments
ref_gex |
gene expression matrix of reference |
method |
correlation method, pearson (PCC, default) or spearman |
p_thre |
p_value threshold for correlation |
prior_network |
the prior network, such as experimental protein-protein interaction (PPI network) NULL (default) or a data.frame that has 2 columns of node couples |
Value
a list including matrix r, P and r_sig
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.