generateAllTrees: Enumerate all spanning trees using modified Gabow-Myers...
In KarchinLab/pictograph: Tools for modeling clonal evolution of a cancer
View source: R/tree-gabowmyers.R
generateAllTrees R Documentation
Enumerate all spanning trees using modified Gabow-Myers wrapper
Description
Enumerate all spanning trees using modified Gabow-Myers wrapper
Usage
generateAllTrees(
mcf,
purity,
lineage_precedence_thresh = 0.1,
sum_filter_thresh = 0.2
)
Arguments
lineage_precedence_thresh
maximum allowed violation of lineage precedence (default = 0.1)
sum_filter_thresh
thresh maximum allowed violation of Sum Condition (default = 0.2)
w
matrix of CCF values (rows = clusters, columns = samples)
KarchinLab/pictograph documentation built on Oct. 25, 2024, 10:10 a.m.
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View source: R/tree-gabowmyers.R
| generateAllTrees | R Documentation |
Enumerate all spanning trees using modified Gabow-Myers wrapper
Description
Enumerate all spanning trees using modified Gabow-Myers wrapper
Usage
generateAllTrees(
mcf,
purity,
lineage_precedence_thresh = 0.1,
sum_filter_thresh = 0.2
)
Arguments
lineage_precedence_thresh |
maximum allowed violation of lineage precedence (default = 0.1) |
sum_filter_thresh |
thresh maximum allowed violation of Sum Condition (default = 0.2) |
w |
matrix of CCF values (rows = clusters, columns = samples) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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