plotClusterAssignmentProbVertical: Plot probabilities of mutation cluster assignments - vertical

In KarchinLab/pictograph: Tools for modeling clonal evolution of a cancer

Plot probabilities of mutation cluster assignments - vertical

Description

Plot probabilities of mutation cluster assignments - vertical

Usage

plotClusterAssignmentProbVertical(
  z_chain,
  mcf_chain,
  filter_thresh = 0.05,
  MutID = NULL,
  SampleID = NULL
)

Arguments

z_chain	MCMC chain of mutation cluster assignment values, which is the second item in the list returned by clusterSep
mcf_chain	MCMC chain of CCF values, which is the first item in the list returned by clusterSep
filter_thresh	Lowest posterior probability to include cluster assignment. Default value is 0.05 (inclusive)
MutID	(Optional) Vector of mutation IDs for labeling purposes. Same order as supplied as input data (e.g. indata$Mut_ID)
SampleID	(Optional) Vector of sample IDs for labeling purposes. Same order as supplied as input data (e.g. indata$Sample_ID)

KarchinLab/pictograph documentation built on Oct. 25, 2024, 10:10 a.m.