runMCMCForAllBoxes: run MCMC using JAGS
In KarchinLab/pictograph: Tools for modeling clonal evolution of a cancer

runMCMCForAllBoxes

R Documentation

run MCMC using JAGS

Description

run MCMC using JAGS

Usage

runMCMCForAllBoxes(
  sep_list,
  sample_presence = TRUE,
  ploidy = 2,
  max_K = 5,
  min_mutation_per_cluster = 5,
  cluster_diff_thresh = 0.05,
  n.iter = 5000,
  n.burn = 1000,
  thin = 10,
  mc.cores = 4,
  inits = list(.RNG.name = "base::Wichmann-Hill", .RNG.seed = 123)
)

KarchinLab/pictograph documentation built on Oct. 25, 2024, 10:10 a.m.