plot_FB: plot_FB

In Keniajin/protGear: Protein Micro Array Data Management and Interactive Visualization

plot_FB

Description

A generic function for plotting the background and foreground values.

Usage

plot_FB(
  df,
  antigen_name = "antigen",
  bg_MFI = "BG_Median",
  FG_MFI = "FBG_Median",
  log_mfi = FALSE
)

Arguments

df	An object containing the data to which the plot is done.
antigen_name	The variable describing which features/proteins/ antibodies in the data should be used to plot
bg_MFI	A numeric variable describing which is the background MFI
FG_MFI	A numeric variable describing which is the foreground MFI
log_mfi	a logical value indicating whether the MFI values should be log transformed or not.

Details

Plot foreground and background values

Value

a ggplot of foreground vs background MFI values

Examples

## Not run:
#After extracting the background using \code{\link{extract_bg}} 
#we plot the data using
allData_bg <- readr::read_csv(system.file("extdata", 
"bg_example.csv", package="protGear"))
plot_FB(allData_bg,
antigen_name = "antigen",
bg_MFI = "BG_Median", FG_MFI = "FBG_Median", log = FALSE
)
## End(Not run)

Keniajin/protGear documentation built on Feb. 6, 2023, 6:28 p.m.