visualize_slide: Visualize the slide mimicking the original scan image.

In Keniajin/protGear: Protein Micro Array Data Management and Interactive Visualization

Visualize the slide mimicking the original scan image.

Description

Visualize the slide mimicking the original scan image.

Usage

visualize_slide(infile, MFI_var, interactive = FALSE, d_f = NA)

Arguments

infile	a .gpr file to be used to visualize the expression intensities of the slide spots
MFI_var	the MFI variable to plot, can be either the background or foreground value
interactive	a logical to specify whether an interactive graph is returned or not
d_f	a data frame with array data

Value

A ggplot of slide foreground values

Examples

## Not run:
visualize_slide(
infile = system.file("extdata", "/array_data/machine1/KK2-06.txt",
 package="protGear"),
MFI_var = "B635 Median"
)
## End(Not run)

Keniajin/protGear documentation built on Feb. 6, 2023, 6:28 p.m.