visualize_slide_2d: Visualize the slide mimicking the original scan image using a...

In Keniajin/protGear: Protein Micro Array Data Management and Interactive Visualization

Visualize the slide mimicking the original scan image using a 2d plot.

Description

Visualize the slide mimicking the original scan image using a 2d plot.

Usage

visualize_slide_2d(infile, MFI_var, d_f = NA)

Arguments

infile	- a .gpr file to be used to visualize the expression intensities of the slide spots
MFI_var	the MFI variable to plot, can be either the background or foreground value
d_f	a data frame with array data

Value

A 2d plot of either the background or foreground values

Examples

## Not run:
visualize_slide_2d(
infile = system.file("extdata", "/array_data/machine1/KK2-06.txt", 
package="protGear"),
MFI_var = "B635 Median"
)
## End(Not run)

Keniajin/protGear documentation built on Feb. 6, 2023, 6:28 p.m.