Files in Keniajin/protGear

Protein Micro Array Data Management and Interactive Visualization

DESCRIPTION

NAMESPACE

NEWS.md R/buffer_spot_functions.R R/cv_by_sample_estimation.R R/cv_estimation_tag_functions.R R/global_functions.R R/launch_protGear_interactive.R R/normalisation_functions.R R/read_files_functions.R README.md

_config.yml

_pkgdown.yml

docs/404.html

docs/articles/index.html

docs/articles/vignette.html

docs/articles/vignette_files/figure-html/before_after_tag-1.png

docs/articles/vignette_files/figure-html/best_cv_plot-1.png

docs/articles/vignette_files/figure-html/bg_plot-1.png

docs/articles/vignette_files/figure-html/bg_vs_fg-1.png

docs/articles/vignette_files/figure-html/buffer_spots_data-1.png

docs/articles/vignette_files/figure-html/cv_by_sample-1.png

docs/articles/vignette_files/figure-html/pca-1.png

docs/articles/vignette_files/figure-html/replicates_plot-1.png

docs/authors.html

docs/index.html

docs/news/index.html

docs/pkgdown.yml

docs/reference/array_vars.html

docs/reference/best_CV_estimation.html

docs/reference/bg_correct.html

docs/reference/buffer_spots.html

docs/reference/check_sampleID_files.html

docs/reference/create_dir.html

docs/reference/cv_by_sample_estimation.html

docs/reference/cv_estimation.html

docs/reference/error_replicates.html

docs/reference/extract_bg.html

docs/reference/index.html

docs/reference/launch_protGear_interactive.html

docs/reference/launch_select.html

docs/reference/matrix_normalise.html

docs/reference/merge_sampleID.html

docs/reference/minpositive.html

docs/reference/name_of_files.html

docs/reference/output_trend_stats.html

docs/reference/plot_FB.html

docs/reference/plot_bg-1.png

docs/reference/plot_bg.html

docs/reference/plot_buffer-1.png

docs/reference/plot_buffer.html

docs/reference/plot_normalised.html

docs/reference/plot_normalised_antigen.html

docs/reference/read_array_files.html

docs/reference/read_array_visualize.html

docs/reference/rlm_normalise.html

docs/reference/rlm_normalise_matrix.html

docs/reference/tag_subtract.html

docs/reference/visualize_slide-1.png

docs/reference/visualize_slide.html

docs/reference/visualize_slide_2d-1.png

docs/reference/visualize_slide_2d.html

inst/extdata/Data1_bg_sample.csv

inst/extdata/Data1_sample.csv

inst/extdata/TAG_antigens.csv

inst/extdata/array_data/machine1/BRB001.txt

inst/extdata/array_data/machine1/KK2-06.txt

inst/extdata/array_matrix.csv

inst/extdata/array_sampleID/BRB001.csv

inst/extdata/array_sampleID/KK2-06.csv

inst/extdata/bg_example.csv

inst/extdata/buffers_sample2.csv

inst/extdata/dataC.csv

inst/extdata/matrix_antigen.csv

inst/scripts/data.R inst/scripts/data.md inst/shiny-examples/protGear_interactive/about_app/server.R inst/shiny-examples/protGear_interactive/about_app/ui.R inst/shiny-examples/protGear_interactive/app.R

inst/shiny-examples/protGear_interactive/error/error_replicates.txt

inst/shiny-examples/protGear_interactive/errors/error_replicates.txt

inst/shiny-examples/protGear_interactive/global.R

inst/shiny-examples/protGear_interactive/help.csv

inst/shiny-examples/protGear_interactive/images/image_slide.png

inst/shiny-examples/protGear_interactive/images/protGear_logo.png

inst/shiny-examples/protGear_interactive/intro_text.html

inst/shiny-examples/protGear_interactive/load_data_dashboard/bloomfilter.R inst/shiny-examples/protGear_interactive/load_data_dashboard/server.R inst/shiny-examples/protGear_interactive/load_data_dashboard/ui.R inst/shiny-examples/protGear_interactive/load_data_dashboard/ui_dashboard.R inst/shiny-examples/protGear_interactive/protGear_interactive.Rmd

inst/shiny-examples/protGear_interactive/protGear_logo_b.png

man/array_vars.Rd man/best_CV_estimation.Rd man/bg_correct.Rd man/buffer_spots.Rd man/check_sampleID_files.Rd man/create_dir.Rd man/cv_by_sample_estimation.Rd man/cv_estimation.Rd man/error_replicates.Rd man/extract_bg.Rd

man/figures/README-pressure-1.png

man/launch_protGear_interactive.Rd man/launch_select.Rd man/matrix_normalise.Rd man/merge_sampleID.Rd man/minpositive.Rd man/name_of_files.Rd man/output_trend_stats.Rd man/plot_FB.Rd man/plot_bg.Rd man/plot_buffer.Rd man/plot_normalised.Rd man/plot_normalised_antigen.Rd man/read_array_files.Rd man/read_array_visualize.Rd man/rlm_normalise.Rd man/rlm_normalise_matrix.Rd man/tag_subtract.Rd man/visualize_slide.Rd man/visualize_slide_2d.Rd

vignettes/folder_structure.png

vignettes/image_slide.png

vignettes/vignette.Rmd

Keniajin/protGear documentation built on Feb. 6, 2023, 6:28 p.m.