plot_normalised: Comparison of normalised data by sample

In Keniajin/protGear: Protein Micro Array Data Management and Interactive Visualization

Comparison of normalised data by sample

Description

Comparison of normalised data by sample

Usage

plot_normalised(exprs_normalised_df, method, batch_correct)

Arguments

exprs_normalised_df	a normalised data frame
method	the method of normalisation used
batch_correct	the batch correction

Value

A ggplot of normalised data

Examples

matrix_antigen <- readr::read_csv(system.file("extdata", 
"matrix_antigen.csv", package="protGear"))
normlise_vsn <- matrix_normalise(as.matrix(matrix_antigen),
method = "vsn",
return_plot = FALSE
)
plot_normalised(normlise_vsn,method="vsn",batch_correct=FALSE)

Keniajin/protGear documentation built on Feb. 6, 2023, 6:28 p.m.