API for Krebslabrep/SingleMoleculeFootprinting
Analysis tools for Single Molecule Footprinting (SMF) data
| Global functions | |
|---|---|
| BaitCapture | Man page Source code |
| BinMethylation | Man page Source code |
| CallContextMethylation | Man page Source code |
| CollapseStrands | Man page Source code |
| CollapseStrandsSM | Man page Source code |
| ConversionRate | Man page Source code |
| CoverageFilter | Man page Source code |
| DetectExperimentType | Man page Source code |
| FilterByConversionRate | Man page Source code |
| FilterContextCytosines | Man page Source code |
| FixOverhang | Man page Source code |
| GetQuasRprj | Man page Source code |
| GetSingleMolMethMat | Man page Source code |
| HierarchicalClustering | Man page Source code |
| OneTFstates | Man page Source code |
| PlotAvgSMF | Man page Source code |
| PlotSM | Man page Source code |
| PlotSingleMoleculeStack | Man page Source code |
| PlotSingleSiteSMF | Man page Source code |
| SampleCorrelation | Man page Source code |
| SingleTFStateQuantificationPlot | Man page Source code |
| SortReads | Man page Source code |
| SortReadsBySingleTF | Man page Source code |
| SortReadsByTFCluster | Man page Source code |
| SortReads_internal | Source code |
| StateQuantificationPlot | Man page Source code |
| TFPairStateQuantificationPlot | Man page Source code |
| TFpairStates | Man page Source code |
| VectorizeReads | Source code |
| string.split | Source code |
