CollapseStrandsSM: Collapse strands in single molecule matrix
In Krebslabrep/SingleMoleculeFootprinting: Analysis tools for Single Molecule Footprinting (SMF) data
View source: R/context_methylation_functions.r
CollapseStrandsSM R Documentation
Collapse strands in single molecule matrix
Description
The idea here is that (regardless of context) if a C is on the - strand, calling getSeq on that coord (N.b. unstranded, that's the important bit) will give a "G', a "C" if it's a + strand.
Usage
CollapseStrandsSM(MethSM, context, genome, chr)
Arguments
MethSM
Single molecule matrix
context
"GC" or "CG". Broad because indicates just the directionality of collapse.
genome
BSgenome
chr
Chromosome, MethSM doesn't carry this info
Value
Strand collapsed MethSM
Krebslabrep/SingleMoleculeFootprinting documentation built on Nov. 19, 2022, 3:56 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/context_methylation_functions.r
| CollapseStrandsSM | R Documentation |
Collapse strands in single molecule matrix
Description
The idea here is that (regardless of context) if a C is on the - strand, calling getSeq on that coord (N.b. unstranded, that's the important bit) will give a "G', a "C" if it's a + strand.
Usage
CollapseStrandsSM(MethSM, context, genome, chr)
Arguments
MethSM |
Single molecule matrix |
context |
"GC" or "CG". Broad because indicates just the directionality of collapse. |
genome |
BSgenome |
chr |
Chromosome, MethSM doesn't carry this info |
Value
Strand collapsed MethSM
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.