SampleCorrelation: Intersample correlation

In Krebslabrep/SingleMoleculeFootprinting: Analysis tools for Single Molecule Footprinting (SMF) data

Intersample correlation

Description

pair plot of sample correlations

Usage

SampleCorrelation(samples, context, CellType, saveAs = NULL)

Arguments

samples	Avg methylation object. Can also be set to "Example" to produce plot using example data of the kind specified by the @param CellType
context	one of "AllCs", "DGCHN", "NWCGW". The first should be chosen for TKO experiments. For experiments carried on WT cells, we recommend checking both the "DGCHN" and "NWCGW" contexts by running this function once per context.
CellType	Cell type to compare your samples to. At the moment, this can be one of "ES", "NP", "TKO".
saveAs	Full path to output plot file

Value

Inter-sample correlation plot

Krebslabrep/SingleMoleculeFootprinting documentation built on Nov. 19, 2022, 3:56 a.m.