ConversionRate: Conversion rate

In Krebslabrep/SingleMoleculeFootprinting: Analysis tools for Single Molecule Footprinting (SMF) data

Conversion rate

Description

calculate sequencing library conversion rate on a chromosome of choice

Usage

ConversionRate(sampleSheet, genome, chr = 19, cores = 1)

Arguments

sampleSheet	QuasR sample sheet
genome	BS genome
chr	chromosome to calculate conversion rate on (default: 19)
cores	number of cores for parallel processing. Defaults to 1

Value

Conversion rate

Examples

Qinput = paste0(tempdir(), "/NRF1Pair_Qinput.txt")
library(BSgenome.Mmusculus.UCSC.mm10)

if(file.exists(Qinput)){
    # DO NOT RUN
    # ConversionRatePrecision = ConversionRate(sampleSheet = Qinput, genome = BSgenome.Mmusculus.UCSC.mm10, chr = 19, cores = 1)
}

Krebslabrep/SingleMoleculeFootprinting documentation built on Nov. 19, 2022, 3:56 a.m.