Files in Krebslabrep/SingleMoleculeFootprinting
Analysis tools for Single Molecule Footprinting (SMF) data
.Rbuildignore
.Rhistory
.github/workflows/r-cmd-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/context_methylation_functions.r
R/plot_single_molecule_examples.r
R/sequencing_QCs.r
R/single_molecule_manipulation_functions.r
R/utilities.r
README.md
SingleMoleculeFootprinting.Rproj
inst/.gitignore
inst/extdata/vignette_ConversionRatePrecision.rds
man/BaitCapture.Rd
man/BinMethylation.Rd
man/CallContextMethylation.Rd
man/CollapseStrands.Rd
man/CollapseStrandsSM.Rd
man/ConversionRate.Rd
man/CoverageFilter.Rd
man/DetectExperimentType.Rd
man/FilterByConversionRate.Rd
man/FilterContextCytosines.Rd
man/FixOverhang.Rd
man/GetQuasRprj.Rd
man/GetSingleMolMethMat.Rd
man/HierarchicalClustering.Rd
man/OneTFstates.Rd
man/PlotAvgSMF.Rd
man/PlotSM.Rd
man/PlotSingleMoleculeStack.Rd
man/PlotSingleSiteSMF.Rd
man/SampleCorrelation.Rd
man/SingleTFStateQuantificationPlot.Rd
man/SortReads.Rd
man/SortReadsBySingleTF.Rd
man/SortReadsByTFCluster.Rd
man/StateQuantificationPlot.Rd
man/TFPairStateQuantificationPlot.Rd
man/TFpairStates.Rd
vignettes/.gitignore
vignettes/SingleMoleculeFootprinting.Rmd
