MCorentin/vargen: Fetching Variants Related to Phenotypes Using Public Databases
Discover and annotate variants related to phenotypes. VarGen is centred on the genes linked to the disease of interest in OMIM (subsequently called the "OMIM genes"). Variants are obtained from the following sources: - OMIM: Variants located directly on the "OMIM genes". - FANTOM5: Variants located on the enhancers of the "OMIM genes". - GTEx: Variants associated with a change in expression for the "OMIM genes", in certain tissues. - GWAS catalog: Variants associated with the phenotype of interest.
Getting started
Browse package contents
Package details |
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| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.2.3 |
| URL | https://github.com/MCorentin/vargen |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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