prepare_fantom: Generate data.frame from FANTOM5 enhancer file
In MCorentin/vargen: Fetching Variants Related to Phenotypes Using Public Databases
prepare_fantom R Documentation
Generate data.frame from FANTOM5 enhancer file
Description
Prepare FANTOM5 for get_fantom5_enhancers_from_hgnc
Usage
prepare_fantom(enhancer_tss_association)
Arguments
enhancer_tss_association
the "enhancer_tss_associations.bed" file from FANTOM5.
The file can be downloaded here:
http://enhancer.binf.ku.dk/presets/enhancer_tss_associations.bed
Value
a data.frame containing the file information
MCorentin/vargen documentation built on Feb. 6, 2024, 2:32 p.m.
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| prepare_fantom | R Documentation |
Generate data.frame from FANTOM5 enhancer file
Description
Prepare FANTOM5 for get_fantom5_enhancers_from_hgnc
Usage
prepare_fantom(enhancer_tss_association)
Arguments
enhancer_tss_association |
the "enhancer_tss_associations.bed" file from FANTOM5. The file can be downloaded here: http://enhancer.binf.ku.dk/presets/enhancer_tss_associations.bed |
Value
a data.frame containing the file information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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