list_gwas_traits: List the available gwas traits
In MCorentin/vargen: Fetching Variants Related to Phenotypes Using Public Databases
list_gwas_traits R Documentation
List the available gwas traits
Description
Return the gwas traits available in the gwas catalog, based on keywords.
The traits are found using grep on the 'DISEASE/TRAIT'
column from the gwas object produced by create_gwas.
Output can be used as parameter for vargen_pipeline
Usage
list_gwas_traits(keywords = "", gwas_cat)
Arguments
keywords
a vector of keywords to grep the traits from the gwas catalog. (default: "")
gwas_cat
output from create_gwas
Value
a vector of traits
Examples
list_gwas_traits(keywords = c("type 1 diabetes", "Obesity"))
MCorentin/vargen documentation built on Feb. 6, 2024, 2:32 p.m.
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| list_gwas_traits | R Documentation |
List the available gwas traits
Description
Return the gwas traits available in the gwas catalog, based on keywords.
The traits are found using grep on the 'DISEASE/TRAIT'
column from the gwas object produced by create_gwas.
Output can be used as parameter for vargen_pipeline
Usage
list_gwas_traits(keywords = "", gwas_cat)
Arguments
keywords |
a vector of keywords to grep the traits from the gwas catalog. (default: "") |
gwas_cat |
output from |
Value
a vector of traits
Examples
list_gwas_traits(keywords = c("type 1 diabetes", "Obesity"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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