format_chr: Format chromosome names
In MCorentin/vargen: Fetching Variants Related to Phenotypes Using Public Databases
format_chr R Documentation
Format chromosome names
Description
Transform 1 to 22, X, Y and MT into chr1 to chr22, chrX, chrY and chMT.
Regex needed because some chr are named CHR17_... and we do not want chrCHR17
Usage
format_chr(chr)
Arguments
chr
a vector of chromosome names
Value
the formatted vector of chromosome names (eg: "chr1" instead of "1")
MCorentin/vargen documentation built on Feb. 6, 2024, 2:32 p.m.
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| format_chr | R Documentation |
Format chromosome names
Description
Transform 1 to 22, X, Y and MT into chr1 to chr22, chrX, chrY and chMT. Regex needed because some chr are named CHR17_... and we do not want chrCHR17
Usage
format_chr(chr)
Arguments
chr |
a vector of chromosome names |
Value
the formatted vector of chromosome names (eg: "chr1" instead of "1")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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