get_omim_genes | R Documentation |
Use getBM
to filter results by
"mim_morbid_accession". One or more accessions can be given as input.
get_omim_genes(omim_ids, gene_mart)
omim_ids |
is a vector of morbity accession eg: c("125853","222100") for Diabetes |
gene_mart |
a connection to hsapiens gene mart, can be generated
from |
a dataframe with
ensembl_gene_id (ensembl stable gene ID, eg:"ENSG00000134640")
chromosome_name (chromosome name)
start_position (gene start)
end_position (gene end)
hgnc_symbol (gene id from the Hugo Gene Nomenclature Committee, eg:"MTNR1B")
mim_morbid_accession (the OMIM morbid ID, eg:"125853")
mim_morbid_accession (the OMIM description, eg: "NONINSULIN-DEPENDENT DIABETES MELLITUS")
gene_mart <- connect_to_gene_ensembl()
DM_genes <- get_omim_genes(c("125853","222100"), gene_mart)
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