deepblue_intersection: intersection

Description Usage Arguments Value See Also Examples

Description

Select genomic regions that intersect with at least one region of the second query. This command is a simplified version of the 'overlap' command.

Usage

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deepblue_intersection(query_data_id = NULL, query_filter_id = NULL,
  user_key = deepblue_options("user_key"))

Arguments

query_data_id

- A string (query data that will be filtered.)

query_filter_id

- A string (query containing the regions that the regions of the query_data_id must overlap.)

user_key

- A string (users token key)

Value

id - A string (id of the new query)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

Examples

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annotation_id = deepblue_select_annotations(
    annotation_name="CpG Islands",
    genome="hg19", chromosome="chr1")
data_id = deepblue_select_experiments(
    experiment_name="E002-H3K9ac.narrowPeak.bed")
deepblue_intersection(query_data_id = annotation_id,
    query_filter_id = data_id)

MPIIComputationalEpigenetics/DeepBlueR documentation built on May 8, 2019, 3:19 p.m.