deepblue_batch_export_results: batch_export_results

Description Usage Arguments Value Examples

Description

Write results from DeepBlue to disk as they become available

Usage

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deepblue_batch_export_results(requests, target.directory = NULL,
  suffix = "result", prefix = "DeepBlue", sleep.time = 1,
  bed.format = TRUE, user_key = deepblue_options("user_key"))

Arguments

requests

A list of request objects

target.directory

Where the results should be saved

suffix

File names suffix

prefix

File names prefix

sleep.time

How long this function will wait after the requests verification

bed.format

whether to store the results as BED files or tab delimited.

user_key

A string used to authenticate the user

Value

A list containing the requests IDs data

Examples

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data_id = deepblue_select_experiments(
experiment_name="E002-H3K9ac.narrowPeak.bed", chromosome="chr1")
request_id = deepblue_get_regions(query_id =data_id,
  output_format = "CHROMOSOME,START,END")
request_data = deepblue_batch_export_results(list(request_id))

MPIIComputationalEpigenetics/DeepBlueR documentation built on May 8, 2019, 3:19 p.m.