In MRCIEU/TwoSampleMR: Two Sample MR Functions and Interface to MR Base Database

suppressPackageStartupMessages(library(knitr))
suppressPackageStartupMessages(library(Cairo))
opts_chunk$set(warning=FALSE, echo=FALSE, message=FALSE, results='asis', fig.width=6, fig.height=6, dev="png", fig.path=paste0('figure/', sanitise_string(title)))

Two sample MR report

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r title

Date: r format(Sys.time(), '%d %B, %Y')

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Results from two sample MR:

kable(tablist$mr, row.names=FALSE)

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Heterogeneity tests

kable(tablist$mr_heterogeneity, row.names=FALSE)

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Test for directional horizontal pleiotropy

kable(tablist$mr_pleiotropy_test, row.names=FALSE)

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Test that the exposure is upstream of the outcome

kable(tablist$directionality_test, row.names=FALSE)

Note - R^2 values are approximate

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Forest plot of single SNP MR

plotlist$mr_forest_plot

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Comparison of results using different MR methods

plotlist$mr_scatter_plot

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Funnel plot

plotlist$mr_funnel_plot

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Leave-one-out sensitivity analysis

plotlist$mr_leaveoneout_plot

MRCIEU/TwoSampleMR documentation built on Sept. 28, 2024, 6:51 p.m.