amp_export_fasta: Export raw DNA sequences

In MadsAlbertsen/ampvis2: Tools for visualising amplicon data

Export raw DNA sequences

Description

Export sequences from an ampvis2 object with added taxonomy.

Usage

amp_export_fasta(data, filename = "exported_sequences.fa", tax = TRUE, ...)

Arguments

data	(required) Data list as loaded with amp_load.
filename	File name of the exported FASTA file. (default: "exported_sequences.fa")
tax	(logical) Add taxonomic strings to the output or not. (default: TRUE)
...	Additional arguments directly passed to write.dna.

Author(s)

Kasper Skytte Andersen [e-mail]

Mads Albertsen [e-mail]

See Also

amp_load, amp_export_otutable

Examples

# Load example data
data("AalborgWWTPs")

# Export fasta sequences as "exported_sequences.fa"
## Not run: 
amp_export_fasta(AalborgWWTPs)

## End(Not run)

MadsAlbertsen/ampvis2 documentation built on Jan. 28, 2024, 7:12 a.m.