amp_import_usearch: (Defunct) Import OTU table from USEARCH pipelines

In MadsAlbertsen/ampvis2: Tools for visualising amplicon data

(Defunct) Import OTU table from USEARCH pipelines

Description

Since ampvis2 v2.7.6 amp_import_usearch() has been implemented directly in amp_load instead. Don't use.

Reads an OTU count table and a corresponding sintax taxonomy table from a USEARCH analysis pipeline, and then converts and combines them into an OTU table compatible with ampvis2.

Usage

amp_import_usearch(...)

Arguments

...	Capture and ignore all args

Value

A data frame

Author(s)

Kasper Skytte Andersen [e-mail]

Examples

## Not run: 
# First import the usearch format OTU table:
usearch_otutable <- amp_import_usearch(
  otutab = "/path/to/otutab.txt",
  sintax = "/path/to/sintax.txt"
)

# Then use amp_load() with or without metadata as normal:
d <- amp_load(usearch_otutable, metadata)

## End(Not run)

MadsAlbertsen/ampvis2 documentation built on Jan. 28, 2024, 7:12 a.m.