dist.JSD: Calculate Jensen-Shannon Divergence distances
In MadsAlbertsen/ampvis2: Tools for visualising amplicon data
dist.JSD R Documentation
Calculate Jensen-Shannon Divergence distances
Description
Calculate Jensen-Shannon Divergence distances
Usage
dist.JSD(abund, pseudocount = 0.000001)
Arguments
abund
Abundance table with OTU counts, in ampvis2 objects it is available with simply data$abund.
pseudocount
Pseudocount to use instead of 0-divisions. (default: 0.000001)
Value
A distance matrix of class dist.
MadsAlbertsen/ampvis2 documentation built on Jan. 28, 2024, 7:12 a.m.
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| dist.JSD | R Documentation |
Calculate Jensen-Shannon Divergence distances
Description
Calculate Jensen-Shannon Divergence distances
Usage
dist.JSD(abund, pseudocount = 0.000001)
Arguments
abund |
Abundance table with OTU counts, in |
pseudocount |
Pseudocount to use instead of 0-divisions. (default: |
Value
A distance matrix of class dist.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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