Man pages for ManuelPerisDiaz/CysMpro
Mass Spectrometry-Based Structural Analysis of Metalloproteins
| annotationMALDI_Bot | Annotate Bottom-up MALDI-MS experiments |
| Assign_Mass | Annotate ESI-MS spectra |
| Assign_MassB | Annotate ESI-MS spectra |
| CountHits | Count Hit ratio |
| Deconvolved_ESI_High | Pre-process and deconvolved ESI-MS spectra with Zscore... |
| decoy | Produce a decoy database |
| Distribution_plot | Distribution plot |
| ELDP | Calculates ELDP |
| ESI.Theoretical | ESI-MS library construction for metal-binding protein |
| FitPeakToGaussian | FitpeakToGaussian |
| maldiTOF.Amp | Extended annotation for Bottom-up MALDI-MS experiments |
| MSMS | Targeted MS/MS annotation |
| msms.batch | Produce a decoy database |
| MS.MS.Multiple | Protein MS/MS library construction. |
| permuSEQ | Permuted protein sequence. |
| plotPeak | Calculates permuted protein sequences according to number of... |
| plot_Peak | Calculates permuted protein sequences according to number of... |
| plotPeakBot | Calculates permuted protein sequences according to number of... |
| PMF_bootstrapping | Determine confidence interval by bootstraping |
| Prob_score | Calculate score probability threshold |
| ProcessESI | Pre-process ESI-MS spectra. |
| ProcessESI_Decon | Pre-process and deconvolved ESI-MS spectra with simulation... |
| ProcessMALDIMS | Pre-process MALDI-MS spectra. |
| Protein.to.List | Library generation of chemical protein Cys-labelled residues. |
| Protein.to.Peptide | Proteolytic digestion of a partial chemical labelled protein. |
| Score_deconvolution | Scoring function for peptide mass fingerprint MALDI-MS... |
| ScoreMSMS | Scoring function for MS/MS spectra. |
| ScoresPMF | Scoring function for peptide mass fingerprint MALDI-MS... |
| SequenceCounting | Sequence coveraged from Bottom-up MALDI-MS experiment. |
| Target | Annotate MALDI-MS spectra |
| TargetESI | Annotate ESI-MS spectra |
| targetMSMS | Annotate ESI-MS/MS spectra |
| targetMSMS_bottom | Annotate ESI-MS/MS spectra |
| target.MSMS.Multiple_B | Annotate top-down MS/MS experiments from multiple... |
| Topdown | Annotate a top-down MS/MS spectra |
| Topdown_batch | Annotate a set of top-down MS/MS spectra |
| Validate_score | Validate the scoring function for peptide mass fingerprint... |
| Validation_topdown | Validation top-down MS/MS results |
