SequenceCounting: Sequence coveraged from Bottom-up MALDI-MS experiment.

In ManuelPerisDiaz/CysMpro: Mass Spectrometry-Based Structural Analysis of Metalloproteins

Description

Calculates the protein sequence coverage provided by bottom-up MALDI-MS experiments

Usage

SequenceCounting(seq, maldiTOF, missed, enzym = "trypsin")

Arguments

seq	Protein sequence.
maldiTOF	Output obtained from annotationMALDI_Bot.
missed	Missed cleavage sites produced by proteolytic enzyme. Default to 2.
enzym	Proteolytic enzyme used in the experiment. Default to Trypsin.

Value

Protein sequence coverage for bottom-up MALDI-MS experiment.

Examples

## Not run: 
MT2a<-("MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCCA")
TheoreticalMass<-Protein.to.Peptide(MT2a)
ProcessMALDIMS<-ProcessMALDIMS(file,t1=500,t2=3500,plotProcess=TRUE,plotDetection=TRUE,plotOriginal = TRUE,comb = "comb3")
maldiTOF<-annotationMALDI_Bot(ProcessMALDIMS,TheoreticalMass,mzw = 1,plot=TRUE,plotIndi=TRUE,orig=TRUE,write=TRUE,In=10)
maldiTOF.Amp(MT2a,maldiTOF)
CountAAPMFF<-SequenceCounting(MT2a,maldiTOF)

## End(Not run)

ManuelPerisDiaz/CysMpro documentation built on Oct. 18, 2020, 6:44 a.m.