ScoreMSMS: Scoring function for MS/MS spectra.

In ManuelPerisDiaz/CysMpro: Mass Spectrometry-Based Structural Analysis of Metalloproteins

Description

Scoring function for MS/MS spectra.

Usage

ScoreMSMS(
  theoryMultiple,
  final,
  tol,
  exp,
  Score = 4,
  write.csv = TRUE,
  write.csvb = TRUE
)

Arguments

theoryMultiple	Theoretical MS/MS library.
final	Output Theoretical MS/MS library.
tol	Mass error
exp	Experimental MS/MS file.
Score	Select the type of score using for finding best prediction following the next order: These are number of ions matched, percentage peaks matched and percentage of ions matched.
write.csv	Write output.
write.csvb	Write output.

Value

Annotation score for MS/MS spectra

ManuelPerisDiaz/CysMpro documentation built on Oct. 18, 2020, 6:44 a.m.