Target: Annotate MALDI-MS spectra

In ManuelPerisDiaz/CysMpro: Mass Spectrometry-Based Structural Analysis of Metalloproteins

Description

Annotate MALDI-MS spectra

Usage

Target(
  ProcessedMALDIMS,
  database,
  mzw = 1,
  write = FALSE,
  orig = TRUE,
  unique = TRUE,
  filterIntensity = TRUE,
  In = 10,
  dir = "C:"
)

Arguments

ProcessedMALDIMS	Output obtain from ProcessMALDIMS.
database	Output obtained from Protein.to.List.
mzw	Mass-to-charge window (Da) for the annotation. Default to 1.
write	Write an output table with results. Default to FALSE.
orig	Plot raw MS spectra. Default to TRUE.
unique	Control annotation. Default to TRUE.
filterIntensity	Filtering by relative intensity. Default to TRUE.
In	Value for filtering by relative intensity. Default to 10.
dir	Directory where to save plots. Default to C:.

Value

Peaks annotated in the MALDI-MS spectra.

Examples

## Not run: 
MT2a<-("MDPNCSCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSCCA")
TheoreticalMass<-Protein.to.List(MT2a, ET= TRUE)
ProcessMALDIMS<-ProcessMALDIMS(file,t1=6000,t2=7000,plotProcess=TRUE,plotDetection=TRUE,plotOriginal = TRUE)
maldiTOF<-Target(ProcessMALDIMS,TheoreticalMass, mzw = 2,orig=TRUE,write=FALSE)


## End(Not run)

ManuelPerisDiaz/CysMpro documentation built on Oct. 18, 2020, 6:44 a.m.