Validate_score: Validate the scoring function for peptide mass fingerprint...

In ManuelPerisDiaz/CysMpro: Mass Spectrometry-Based Structural Analysis of Metalloproteins

Description

Validate the scoring function for peptide mass fingerprint MALDI-MS experiment.

Usage

Validate_score(
  ProcessMALDIMS,
  TheoreticalMass,
  mzw,
  nAA,
  threshold,
  Mw,
  sequence,
  Npermu = 10000,
  In,
  prob = FALSE,
  score_prob_threshold,
  missed
)

Arguments

ProcessMALDIMS	Processed MALDI-MS spectrum Protein sequence.
TheoreticalMass	Output obtained from Protein.to.Peptide.
mzw	Mass error window.
nAA	Number of amino acids in the protein sequence.
threshold	threshold for scoring
Mw	Molecular weight of the protein assayed.
sequence	Protein sequence
Npermu	Number of permutations
In	In for annotationMALDI_Bot function
prob	If TRUE returns the score calculated with binomial function
score_prob_threshold	Threshold for probability
missed	Number of missed proteolytic cleavages

Value

Annotation score for PMF MALDI-MS.

ManuelPerisDiaz/CysMpro documentation built on Oct. 18, 2020, 6:44 a.m.