annotationMALDI_Bot: Annotate Bottom-up MALDI-MS experiments

In ManuelPerisDiaz/CysMpro: Mass Spectrometry-Based Structural Analysis of Metalloproteins

Description

Annotate Bottom-up MALDI-MS experiments

Usage

annotationMALDI_Bot(
  ProcessedMALDIMS,
  TheoreticalMass,
  mzw = 1,
  write = FALSE,
  plot = TRUE,
  orig = TRUE,
  lint = 3,
  rint = 3,
  FilterInt = TRUE,
  In = 10,
  plotIndi = TRUE,
  dir = getwd(),
  save.name
)

Arguments

ProcessedMALDIMS	Output obtain from ProcessMALDIMS.
TheoreticalMass	Output obtained from Protein.to.Peptide.
mzw	Mass-to-charge window (Da) for the annotation. Default to 1.
write	Write an output table with results. Default to FALSE.
plot	Plot the peptides found. Default to TRUE.
orig	Plot raw MS spectra. Default to TRUE.
lint	Left interval for plotting purposes. Default to 3.
rint	Right interval for plotting purposes. Default to 3.
FilterInt	Control filtering by relative intensity. Default to TRUE.
In	value for filtering by relative intensity. Default to 10.
plotIndi	Plot specific peptides matched. Default to TRUE.
dir	Directory where to save plots. Default to C:.
save.name	Name to save output.

Value

Peaks annotated in the MALDI-MS spectra.

ManuelPerisDiaz/CysMpro documentation built on Oct. 18, 2020, 6:44 a.m.