Files in MarianSchoen/DMC

Comparison of different Deconvolution Models in several scenarios

R/add_subtype_pheno.R R/benchmark.R R/bootstrap.R R/bootstrap_bulks.R R/check_algorithms.R R/complete_estimates.R R/create_boxplots.R R/create_bulks.R R/create_lineplots.R R/create_scatterplots.R R/create_score_tables.R R/create_sig_matrix.R R/deconvolute.R R/detect_present_algos.R R/fine_coarse_subtype_benchmark.R R/geneset_benchmark.R R/get_hclust.R R/h5_read_data.R R/h5_read_mat.R R/h5_read_misc.R R/h5_read_result.R R/h5_write_data.R R/h5_write_mat.R R/h5_write_misc.R R/h5_write_results.R R/marker_genes.R R/plot_all.R R/plot_cond_num.R R/plot_runtime.R R/plot_scores.R R/prepare_data.R R/render_results.R R/sample_benchmark.R R/scale_counts.R R/split_dataset.R R/subtype_plot.R R/wrapper_deconRNASeq.R R/wrapper_dtd.R R/wrapper_lsq.R README.md development/2021-10-06_DAB_summary.md development/2021-10-06_DAB_summary.pdf development/complete_benchmark.R development/via_dtd_get_random_data.R development/working_example.R development/working_example_fast.R inst/rmd/report.Rmd man/add_subtype_pheno.Rd man/benchmark.Rd man/bootstrap_bulks.Rd man/check_algorithms.Rd man/complete_estimates.Rd man/create_boxplots.Rd man/create_bulks.Rd man/create_lineplots.Rd man/create_scatterplots.Rd man/create_score_tables.Rd man/create_sig_matrix.Rd man/deconvolute.Rd man/evaluation_plot.Rd man/fine_coarse_subtype_benchmark.Rd man/geneset_benchmark.Rd man/get_hclust.Rd man/h5_read_mat.Rd man/h5_write_mat.Rd man/marker_genes.Rd man/plot_all.Rd man/plot_cond_num.Rd man/plot_runtime.Rd man/prepare_data.Rd man/present_algos.Rd man/read_data.Rd man/read_misc_input.Rd man/read_result_list.Rd man/render_results.Rd man/run_deconrnaseq.Rd man/run_dtd.Rd man/run_least_squares.Rd man/sample_size_benchmark.Rd man/scale_to_count.Rd man/split_dataset.Rd man/subtype_plot.Rd man/write_data.Rd man/write_misc_input.Rd man/write_result_list.Rd vignettes/DMC.Rmd