corMirnaRnaMiranda: corMirnaRnaMiranda correlation for miRNA and mRNA

In Mercedeh66/mirTarRnaSeq: mirTarRnaSeq

corMirnaRnaMiranda correlation for miRNA and mRNA

Description

This function uses the output of one2OneRnaMiRNA and returns the correlation dataframe.

Usage

corMirnaRnaMiranda(mRNA, miRNA, CorVal, getInputSpeciesDF, method = "pearson")

Arguments

mRNA	mRNA file generated from foldchanges (FC) obj of the one2OneRnaMiRNA.
miRNA	miRNA file generated from foldchanges (FC) obj of the one2OneRnaMiRNA
CorVal	Correlation cut off.Example: If correlation -0.2 it would only return correlations with smaller than this value correlation for miRNA and mRNA at various time points.
getInputSpeciesDF	The dataframe generated from the getInputSpecies function.
method	Default is "pearson" else use "kendall" or "spearman".

Value

Correlation dataframe

Examples

x <- corMirnaRnaMiranda(mRNA_fc, miRNA_fc, Cor = -0.9, miRandaM)

Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.