mirRnaHeatmap: mirRnaHeatmap pheatmap for miRTarRNASeq miRNA and mRNA...

View source: R/mirRnaHeatmap.R

mirRnaHeatmapR Documentation

mirRnaHeatmap pheatmap for miRTarRNASeq miRNA and mRNA correlation

Description

This function draws pheatmaps for miRNA and mRNA correlation while using default and pheatmap for all other parameters

Usage

mirRnaHeatmap(
  finalF,
  ...,
  upper_bound = 0,
  main = "Default mRNA miRNA heatmap",
  color = c(viridis::inferno(50), "grey90"),
  fontsize = 7
)

Arguments

finalF

data.frame results of corMirnaRnaMiranda or corMirnaRna function

...

arguments passed onto pheatmap

upper_bound

is the upper_bound of the correlation pheatmap scale default is zero user can set to values based on output of correlation result (value)

main

is the title of the pheatmap

color

default inferno(50) from the library viridis R base, R colorbrewer and viridis compatible

fontsize

default is 7 user adjustable

Value

pheatmap Obj

Examples

x <- mirRnaHeatmap(corr_0)

Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.