miRandaIntersect: miRandaIntersect Looks for Intersection of Significant output...

In Mercedeh66/mirTarRnaSeq: mirTarRnaSeq

miRandaIntersect Looks for Intersection of Significant output results with miRanda Results from getInputSpeciesDF function

Description

Compares and looks for intersection if significant output results with miRanda Results from getInputSpeciesDF and outputs a final filtered output for only those pairs of miRNA and mRNA which have actually been predicted to be targets in miRanda file function

Usage

miRandaIntersect(sig_corrs, corrS, mRNA, miRNA, getInputSpeciesDF)

Arguments

sig_corrs	correlation matrix, produced by threshSig.
corrS	vector of correlations/differences, from the sampCorRnaMirna function.
mRNA	mRNA FC matrix.
miRNA	miRNA FC matrix.
getInputSpeciesDF	miranda data, produced by getInputSpecies.

Value

An object containing data.frames of significant mRNA, miRNA and correlation matrix filtered by miRanda input.

Examples

x <- miRandaIntersect(sig_InterR, outs2, mRNA_fc, miRNA_fc, miRandaM)

Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.