mirRnaHeatmapDiff: mirRnaHeatmapDiff heatmap for miRTarRNASeq miRNA and mRNA...

In Mercedeh66/mirTarRnaSeq: mirTarRnaSeq

mirRnaHeatmapDiff heatmap for miRTarRNASeq miRNA and mRNA correlation

Description

This function draws heatmaps (pheatmaps) for miRNA and mRNA correlation while using default and heatmap for all other parameters

Usage

mirRnaHeatmapDiff(
  finalF,
  ...,
  upper_bound = 0,
  main = "Default mRNA miRNA heatmap",
  color = c("grey90", viridis::inferno(50)),
  fontsize = 7
)

Arguments

finalF	data.frame results of corMirnaRnaMiranda or corMirnaRna function
...	arguments passed onto pheatmap
upper_bound	is the upper_bound of the correlation pheatmap scale default is zero user can set to values based on output of correlation result (value)
main	is the title of the pheatmap
color	default inferno(50) from the library viridis R base, R colorbrewer and viridis compatible
fontsize	default is 7 user adjustable

Value

pheatmap Obj

Examples

x <- mirRnaHeatmapDiff(results$corrs, upper_bound = -0.1, color = rainbow(50), fontsize = 10)

Mercedeh66/mirTarRnaSeq documentation built on April 14, 2023, 6:49 a.m.